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Google Scholar Citations

  • "Accelerated Collapse Kinetics of Charged Polymers in Good Solvent: Role of Counterion Condensation", Susmita Ghosh, Satyavani Vemparala, arXiv:2504.12642, 2025.

  • "Aging of ring polymeric topological glass formers via thermal quench", Arabinda Behera, Projesh Roy, Pinaki Chaudhuri, Satyavani Vemparala, arXiv:2504.02557, 2025.

  • "Bridging-induced Aggregation in Neutral Polymers: Dynamics and Morphologies", Hitesh Garg, Satyavani Vemparala, arXiv:2504.00703, 2025.

  • "Two-dimensional squishy glass: yielding under oscillatory shear", Sayantan Ghosh, Rahul Nayak, Satyavani Vemparala, Pinaki Chaudhuri, Soft Matter, 2025.

  • "The Role of Negatively Charged Groups in Antimicrobial Cationic Peptide Mimics: Insights into Membrane Interactions", Roni Saiba, Ananya Debnath, Satyavani Vemparala, bioRXiv:2024.12.02.626308, 2024.

  • "Neutral polymer conformations with attractive bridging crowder interactions: role of crowder size", Hitesh Garg, Satyavani Vemparala, arXiv:2410.04113, 2024.

  • "Solvent-cosolvent attraction is sufficient to induce polymer collapse in good solvent mixtures", Hitesh Garg, Divya Nayar, Satyavani Vemparala, arXiv:2410.02211, 2024.

  • "Role of Tyrosine Phosphorylation in PTP-PEST", TS Sreevidya, Amrutha Manikandan, Manoj Narayanan, Madhulika Dixit, Satyavani Vemparala, The Journal of Physical Chemistry B, 2024.

  • "Role of protein-protein interactions on organization and dynamics of a model chromatin", Pinaki Swain, Sandeep Choubey, Satyavani Vemparala, The Journal of Chemical Physics,161, 134901, 2024.

  • "Correlation between antimicrobial structural classes and membrane partitioning: Role of emerging lipid packing defects", SV Sankaran, Roni Saiba, Samapan Sikdar, Satyavani Vemparala, The Journal of Membrane Biology,1-15, 2024.

  • "Bidisperse ring polymers: Topological glass to stacking", Projesh Roy, Pinaki Chaudhuri, Satyavani Vemparala, Physical Review Materials, 8, 045601, 2024.

  • "Onset of glassiness in two-dimensional ring polymers: Interplay of stiffness and crowding", Sayantan Ghosh, Satyavani Vemparala, Pinaki Chaudhuri, The Journal of Chemical Physics , 160, 014906, 2024.

  • "The conformational phase diagram of charged polymers in the presence of attractive bridging crowders", Kamal Tripathi, Hitesh Garg, R. Rajesh, Satyavani Vemparala, The Journal of Chemical Physics,159, 204903, 2023.

  • "Conformational landscape of long semiflexible linear and ring polymers near attractive surfaces", Kamal Tripathi, Satyavani Vemparala, arXiv:2304.11548, 2023.

  • "The conformational phase diagram of neutral polymers in the presence of attractive crowders", Hitesh Garg, R Rajesh, Satyavani Vemparala,The Journal of Chemical Physics, 158, 14903, 2023.

  • "Role of Lipid packing defects in determining membrane interactions of antimicrobial polymers", Samapan Sikdar, Garima Rani, Satyavani Vemparala , Langmuir, 39, 4406, 2023.

  • "In-silico identification of Tyr232 in AMPK-alpha2 as a dephosphorylation site for the protin tyrosine phosphatase PTP-PEST", Amrutha Manikandan, TS Sreevidya, Manoj Narayanan, Satyavani Vemparala, Madhulika Dixit, PROTEINS:Structure, Function, and Bioinformatics,1-16, 2023.

  • "Biomimetic Antimicrobial Polymers - Design, Characterization, Antimicrobial and Novel Applications", Haruko Takahashi, Iva Sovadinova, Kazuma Yasuhara, Satyavani Vemparala, Gregory Caputo, Kenichi Kuroda, WIREs Nanomedicine & Nanobiotechnology, 2022.

  • "Effect of ring stiffness and ambient pressure on the dynamical slowdown in ring polymers", Projesh Kumar Roy, Pinaki Chaudhuri, Satyavani Vemparala, Soft Matter,18, 2959, 2022.

  • "Role of Disulfide Bonds in Membrane Partitioning of a Viral Peptide", Samapan Sikdar, Manidipa Banerjee, Satyavani Vemparala, The Journal of Membrane Biology, 255,129 2022.

  • "Structural insights on the effects of mutation of a charged binding pocket residue on phosphopeptide binding to 14-3-3zeta Protein", Sreevidya TS, Somavally Dalvi, Prasanna Venkatraman, Satyavani Vemparala, PROTEINS:Structure, Function, and Bioinformatics, 2022.

  • "Phosphorylation of interfacial phosphosite leads to increased binding of Rap-Raf complex", Devanand T, Susmita Ghosh, Prasanna Venkatraman, Satyavani Vemparala, bioRxiv:2021.12.19.473331, 2021.

  • "Kinetics of charged polymer collapse in poor solvents", Susmita Ghosh, Satyavani Vemparala, Journal of Physics: Condensed Matter, 2021.

  • "Effect of Cholesterol on Membrane Partitioning Dynamics of Hepatitis A Virus-2B peptide", Samapan Sikdar, Manidipa Banerjee, Satyavani Vemparala, Soft Matter, 17, 7963, 2021.

  • "The Function of Peptide-Mimetic Anionic Groups and Salt Bridges in the Antimicrobial Activity and Conformation of Cationic Amphiphilic Copolymers", Rajani Bhat, Leanna Foster, Garima Rani,Satyavani Vemparala, Kenichi Kuroda, RSC Advances, 11, 22044, 2021.

  • "Towards designing globular antimicrobial peptide mimics: role of polar functional groups in biomimetic ternary antimicrobial polymers", Garima Rani, Kenichi Kuroda, Satyavani Vemparala, Soft Matter, 17, 2090 2021.

  • "Kinetics of charged polymer collapse: effects of additional salt", Susmita Ghosh, Satyavani Vemparala, bioRxiv:2020.03.06.981431, 2020.

  • "Aggregation dynamics of methacrylate binary and ternary biomimetic polymers in solution", Garima Rani, Kenichi Kuroda, Satyavani Vemparala,Journal of Physics: Condensed Matter , 33, 064003 2020.

  • "Confined crowded polymers near attractive surfaces", Kamal Tripathi, Gautam I Menon, Satyavani Vemparala, The Journal of Chemical Physics, 151, 244901, 2019.

  • "Aggregation dynamics of charged peptides in water: effect of salt concentration", Susmita Ghosh, Devanand T, Upayan Baul Satyavani Vemparala, The Journal of Chemical Physics, 151, 074901,2019.

  • "Biomimetic Antimicrobial Polymers", Upayan Baul, Satyavani Vemparala, Biomaterials Science Series No. 5 Antimicrobial Materials for Biomedical Applications,The Royal Society of Chemistry, Chapter 4, 113-136, 2019.

  • "Interdigitation of lipids induced by membrane active proteins", Devanand T, Sankaran Krishnaswamy, Satyavani Vemparala, Journal of Membrane Biology, 331, 252, 2019.

  • "Phosphorylation promotes binding affinity of Rap-Raf complex by allosteric modulation of switch loop dynamics", Devanand T, Prasanna Venkatraman, Satyavani Vemparala, Scientific Reports, 8, 12976, 2018.

  • "Aggregation of flexible polyelectrolytes: Phase diagram and dynamics", Anvy Moly Tom, R. Rajesh, Satyavani Vemparala, The Journal of Chemical Physics, 147, 144903, 2017.

  • "Influence of lipid composition of model membranes on methacrylate antimicrobial polymer - membrane interactions", Upayan Baul, Satyavani Vemparala, Soft Matter,13, 7665, 2017.

  • "Synthetic random copolymers as a molecular platform to mimic host-defense antimicrobial peptides", Haruko Takahashi, Gregory Caputo, Satyavani Vemparala, Kenichi Kuroda, Bioconjugate Chemistry, 28,1340, 2017.

  • "Regimes of strong electrostatic collapse of a highly charged polyelectrolyte in a poor solvent", Anvy Moly Tom, Satyavani Vemparala, R. Rajesh and Nikolai V. Brilliantov, Soft Matter, 13,1862, 2017.

  • "Mechanism of chain collapse of strongly charged polyelectrolytes", Anvy Moly Tom, Satyavani Vemparala, R. Rajesh and Nikolai V. Brilliantov, Physical Review Letters, 117,147801, 2016.

  • "Isosteric Substitution in Cationic-amphiphilic Polymers Reveals an Important Role for Hydrogen Bonding in Bacterial Membrane Interactions", D. S. S. M. Uppu, M. M. Konai, Upayan Baul, P. Singh, T. K. Siersma, S. Samaddar, Satyavani Vemparala, L.W. Hamoen, C. Narayana and J. Haldar, Chemical Science, 7, 4613, 2016.

  • "Aggregation Dynamics of Rigid Polyelectrolytes", Anvy Moly Tom, R. Rajesh, Satyavani Vemparala, The Journal of Chemical Physics 144, 034904, 2016.

  • "Effect of simple solutes on the long range dipolar correlations in liquid water", Upayan Baul, J. Maruthi Pradeep Kanth, Ramesh Anishetty, Satyavani Vemparala, The Journal of Chemical Physics), 2016.

  • "Membrane-Bound Conformations of Antimicrobial Agents and Their Modes of Action", Upayan Baul, Satyavani Vemparala, (Book Chapter) Advances in Planar Lipid Bilayers and Liposomes, 2015.

  • "Ion Hydration and Associated Defects in Hydrogen Bond Network of Water: Observation of Reorientationally Slow Waters beyond First Hydration Shell", Upayan Baul, Satyavani Vemparala, Physical Review E 91, 012114, 2015.

  • "Interaction of multiple biomimetic antimicrobial polymers with model bacterial membranes", Upayan Baul, Kenichi Kuroda, Satyavani Vemparala, The Journal of Chemical Physics 141, 084902, 2014.

  • "Force fluctuations in stretching a tethered polymer", Anoop Varghese, Satyavani Vemparala, R. Rajesh, Physical Review E 88, 022134, 2013.

  • "Studies on Structural and Average Unfolding behaviour of FNIII domain of Contactin-1 Protein by Molecular Dynamics Simulation", M. Ponmurugan, Satyavani Vemparala, The Frontiers of Life Sciences 6, 33, 2013.

  • "Antimicrobial Polymers: Molecular Design As Synthetic Mimics of Host­ Defense Antimicrobial Peptides", Edmund Palermo, Satyavani Vemparala, Kenichi Kuroda, "Tailored Polymer Architectures for Pharmaceutical and Biomedical Applications, ACS Book Chapter 19, 319, 2013.

  • "Partitioning of ethanol in multi-component membranes: effects on membrane structure", Anirban Polley, Satyavani Vemparala, Chemistry and Physics of Lipids 166, 1, 2013.

  • "Aggregation of rod-like polyelectrolyte chains in the presence of monovalent counterions", Anoop Varghese, R. Rajesh, Satyavani Vemparala, The Journal of Chemical Physics 137, 234901, 2012.

  • "Atomistic simulations of a multicomponent asymmetric lipid bilayer", Anirban Polley, Satyavani Vemparala, Madan Rao, The Journal of Physical Chemistry B 116, 13403, 2012.

  • "Phase transitions of a single polyelectrolyte chain in a poor solvent with multivalent counterions", Anoop Varghese, Satyavani Vemparala, R. Rajesh, AIP Conf. Proc. 1447, 129, 2012.

  • "Cationic spacer arm design strategy for control of antimicrobial activity and conformation of amphiphilic methacrylate random copolymers, Edmund Palermo, Satyavani Vemparala", Kenichi Kuroda, Biomacromolecules 13, 1632, 2012.

  • "Ensemble equivalence for counterion condensation on a two dimensional charged disc", Anoop Varghese, Satyavani Vemparala, R. Rajesh, Physical Review E 85, 011119, 2012.

  • "Transient state fluctuation like relations for the driving force on a biomolecule", M. Ponmurugan, Satyavani Vemparala, Physical Review E (Rapid Communications) 84, 060101, 2011.

  • "Phase transitions of a single polyelectrolyte in a poor solvent with explicit counterions", Anoop Varghese, Satyavani Vemparala, R. Rajesh, The Journal of Chemical Physics 135, 154902, 2011.

  • "Role of loop dynamics in thermal stability of mesophilic and thermophilic adenylosuccinate synthetase: A molecular dynamics and normal mode analysis study", Satyavani Vemparala, Sonali Mehrotra, Hemalatha Balaram, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, 630, 2011.

  • "Long Distance Correlations in Molecular Orientations of Liquid Water and Shape Dependant Hydrophobic Force", J. M. Pradeep Kanth, Satyavani Vemparala, Ramesh Anishetty, Physical Review E 81, 021201, 2010.

  • "Computational studies on the interactions of inhalational anesthetics with proteins" (Review Article), Satyavani Vemparala, Carmen Domene, Michael L, Klein, Accounts of Chemical Research 43, 103, 2010.

  • "Molecular dynamics calculations suggest a conduction mechanism for the M2 proton channel from influenza A virus", Ekta Khurana, Matteo Dal Peraro, Russell DeVane, Satyavani Vemparala, William F. DeGrado, Michael L, Klein, Proceedings of National Academy of Sciences 106, 1069, 2009.

  • "Synthetic mimics of antimicrobial peptides", (Review Article), Abhigyan Som, Satyavani Vemparala, Ivaylo Ivanov, Gregory N. Tew, Biopolymers (Peptide Science) 90, 83, 2008.

  • "Interaction of anesthetics with open and closed conformations of a potassium channel studied via molecular dynamics and normal mode analysis", Satyavani Vemparala, Carmen Domene, and Michael L. Klein, Biophysical Journal 94, 4260, 2008.

  • "The role of conformation in ion permeation in a K+ channel", Carmen Domene, Satyavani Vemparala, Simone Furini, Kim Sharp, Michael L. Klein, Journal of American Chemical Society 130, 3389, 2008.

  • "Partitioning of Anesthetics into a Lipid Bilayer and their Interaction with Membrane-bound Peptide Bundles", Satyavani Vemparala, Leonor Saiz, Roderic G. Eckenhoff, and Michael L. Klein, Biophysical Journal 91, 2815, 2006.

  • "Role of Aromatic Localisation in the Gating Process of a Potassium Channel", Carmen Domene, Satyavani Vemparala, Michael L. Klein, Catherine Venien-Bryan, and Declan A. Doyle, Biophysical Journal 90, L01, 2006.

  • "Ab Initio Calculations of Intramolecular Parameters for a Class of Arylamide" Polymers, Satyavani Vemparala, Ivaylo Ivanov, Vojislava Pophristic, Katrin Spiegel, and Michael L. Klein, Journal of Computational Chemistry 27, 693, 2006.

  • "Controlling the Shape and Flexibility of Arylamides: A Combined Ab Initio, Ab Initio Molecular Dynamics and Classical Molecular Dynamics Study", Vojislava Pophristic, Satyavani Vemparala, Ivaylo Ivanov, Zhiwei Liu, Michael L. Klein, and William F. DeGrado, The Journal of Physical Chemistry B 110, 3517, 2006.

  • "Characterization of Nonbiological Antimicrobial Polymers in Aqueous Solution and at Water-Lipid Interfaces from All-Atom Molecular Dynamics", Ivaylo Ivanov, Satyavani Vemparala, Vojislava Pophristic, Kenichi Kuroda, William F. DeGrado, J. Andrew McCammon, and Michael L. Klein, Journal of American Chemical Society 128, 1778, 2006.

  • "The Design and Evaluation of Heparin-Binding Foldamers", Sungwook Choi, Dylan J. Clements, Vojislava Pophristic, Ivaylo Ivanov, Satyavani Vemparala, Joel S. Bennett, Michael L. Klein, Jeffrey D. Winkler, and William F. DeGrado, Angewandte Chemie Int. Ed. 44, 6599, 2005.

  • "Large Scale Molecular Dynamics Simulations of Alkane-thiol Self-Assembled Monolayers", Satyavani Vemparala, Bijaya B. Karki, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishita, The Journal of Chemical Physics 121, 4323,2004 .

  • "Electric field induced switching of poly(ethylene glycol) terminated self-assembled monolayers: A parallel molecular dynamics simulation", Satyavani Vemparala, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishita, The Journal of Chemical Physics 121, 542,2004.

  • "Scalable and Portable Implementation of the Fast Multipole Method on Parallel Computers", S. Ogata, T. Campbell, R.K. Kalia, A. Nakano, P. Vashishta, Satyavani Vemparala, Computer Physics Communications 153, 445, 2003.