Next:
How to run Namd
How to run Namd and vmd
How to generate Psf file
Protein
How to build solvate around the biomolecular system
Example Protein in water box
Example Protein in minimum water sphere
Protein in a given radius water sphere
Example Simualtions
BPTI
APOMYOGLOBIN
Constant Velocity Pulling
Constant Extension Ensemble
References
About this document ...
Srinivasa Murthy .G 2004-05-02
