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 3D - PROTEIN (Stucture) DATABASES      

 
Sequences of domains of known structure, selected subsets, and sequence-structure correspondences

 
Searchable database of multidimensional biological images
 
 
NMR spectroscopic data from proteins, peptides, and nucleic acids 

 
Conformation angles of protein structures, with associated crystallographic data

 
Protein domain structures
 
 
CE: A Resource to Compute and Review 3-D Protein Structure Alignments 

 
Structurally-similar proteins with dissimilar sequences

 
Crystal structure information for organic and metal organic compounds.

 
Descriptions of protein and macromolecular motions, including movies
 
 
Computer-generated protein conformations based on sequence data
DSDBASE   
 
Native and modeled disulfide bonds in proteins
 
Database of Simulated Molecular Motions
 

GTOP   
 
Protein fold predictions from genome sequences
 
Structures of small molecules (≥hetero-compounds≤)
 
 
Structural families and alignments; structurarlly-conserved regions and domain architecture 
 

 
Visualization and analysis of three-dimensional biopolymer structures
 
Integrated sequence and structural information
 
 
Library of protein family core structures
 
 
All experimentally-determined three-dimensional structures, linked to NCBI Entrez

ModBase   
 
Annotated comparative protein structure models
 
 
Nucleic acid-containing structures
 

NTDB   
 
Thermodynamic data for nucleic acids 
 

 
Phylogeny and alignment of homologous protein structures

 
PASS2   
 
Structural motifs of protein superfamilies
 
Structure data determined by X-ray crystallography and NMR

 
 
Representative protein chains, based on PDB entries
 
 
Summary of key information on structures in PDB

PRESAGE   
 
Protein structures with experimental and predictive annotations


 
 
Thermodynamic data for wild-type and mutant proteins

 

 
Protein structure modifications

 

 
RNA-containing structures from PDB and NDB

SCOP   
 
Familial and structural protein relationships

SCOR   
 
RNA structural relationships
 
 
Classification of protein loops
 
 
Assignments of proteins to structural superfamilies

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